DIAL™
-
DI
hedral
AL
ignment Server (RNA Version)
Input
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Target:
ID
File
Query:
ID
File
Fragmented Query
Chain and subsequence
Target
Query
From
To
From
To
Parameters
Algorithm
Motif search
Needleman-Wunsch
Smith-Waterman
Suboptimal Alignments score ratio
|
Scoring contributions
Dihedral
Sequence
Base pairing
Boltzmann Pair Probabilities
Compute Boltzmann Pair Probabilities
Yes
No
Temperature 1
Temperature 2
Temperature 3
Weights for RNA dihedral angles
α
β
γ
δ
ε
ζ
χ
Pseudo-angles:
η
θ
Gap Penalties
Opening
Extension
Scores for RNA sequence alignment
Match
Mismatch
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