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Times for Modena structures

Id Size CPdesign Info-RNA Modena RNA-SSD RNAinverse Structure Sequence Image
RF00001.121 117 21.5 0.0 36.8 1.0 233.1
RF00002.2 151 29.5 62.6 39.4 12.2 -
RF00003.94 161 - 72.1 70.2 - -
RF00004.126 193 1.5 0.1 52.9 2.0 48.3
RF00005.1 74 0.2 0.0 12.4 0.1 0.1
RF00006.1 89 0.3 0.0 15.1 0.6 4.3
RF00007.20 154 5.6 0.0 44.4 1.1 12.4
RF00008.11 54 0.1 0.0 8.7 0.0 0.0
RF00009.115 348 20.8 - 214.1 48.2 -
RF00010.253 357 - - - - -
RF00011.18 382 - - - - -
RF00012.15 215 2.7 25.0 64.5 28.8 139.4
RF00013.139 185 1.6 0.8 51.5 2.8 19.8
RF00014.2 87 0.3 0.0 17.5 0.1 0.0
RF00015.101 140 1.3 0.2 29.1 0.6 52.4
RF00016.15 129 - - - - -
RF00017.90 301 19.3 0.0 208.1 7.0 10.0
RF00018.2 360 12.1 697.0 331.5 - -
RF00019.115 83 0.2 0.0 14.9 0.2 0.3
RF00020.107 119 - - - - -
RF00021.10 118 0.3 0.0 27.8 0.2 0.2
RF00022.1 148 0.7 0.0 32.6 0.9 225.5
RF00024.16 451 - - - - -
RF00025.12 210 1.4 47.9 54.2 2.9 -
RF00026.1 102 0.4 5.5 15.2 1.4 173.2
RF00027.7 79 0.1 0.0 17.4 0.1 0.4
RF00028.1 344 6.2 - - 71.2 -
RF00029.107 73 0.3 0.0 10.4 0.2 0.3
RF00030.30 340 6.8 57.3 186.8 39.3 -


Times for RNA-SSD structures

Accesion Size CPdesign Info-RNA Modena RNA-SSD RNAinverse Structure Sequence Image
Z83250 260 2.6 0.0 125.6 2.1 213.9
L11935 264 5.0 0.0 121.8 1.1 109.1
LIU92530 289 10.0 0.0 - 354.9 351.9
U84629 299 5.5 0.0 153.1 6.4 554.6
AF107506 337 9.5 0.0 218.2 6.6 347.6
AF106618 350 20.8 0.0 131.9 2.1 265
AJ011149 376 140.5 0.0 - 62.5 463.5
S70838 389 27.9 0.0 275.4 7.1 295.2
U63350 418 11.7 1.2 191.3 2.8 346.3
AF141485 473 51.4 0.1 266.6 65.1 -
U81771 491 28.8 0.1 221.6 26.2 -
AJ130779 506 70.1 0.1 227 11 507.2
AF096836 646 48.2 0.3 440.4 15.5 -
X61771 659 67.0 0.3 - 129.6 -
AJ236455 751 - - - 39.2 -
AJ132572 780 158.2 0.3 - 30 -
AB015827 856 245.2 5.2 - 49.7 -
D38777 858 173.3 1.5 - 17.3 -
AF029195 1053 321.0 2.7 - 42.2 -
X81949 1200 197.1 15.7 - 48.5 -
AJ133622 1296 - 7.8 - 128.6 -
AF056938 1398 477.9 2.5 319.7 58.5 -
X99676 1442 569.2 9.8 510.1 156.5 -
L77117 1475 - 20.4 - 90.4 -


Times for RNA-SSD test set C

Id Size CPdesign Info-RNA Modena RNA-SSD RNAinverse Structure Sequence Image
1 65 0.1 0.0 19.3 0.1 0.1
2 79 0.0 0.0 26.2 0.1 0.1
3 122 2.7 0.0 69.4 1.5 4.1
4 167 0.7 0.0 104.5 0.9 4.1
5 180 0.7 165.7 245.7 - 407.9
6 314 6.2 0.8 192.2 0.0 362
7 340 9.8 0.8 405.9 12.8 254.6
8 372 7.0 19.5 421.1 48.4 -
9 376 - - - - -
10 583 32.9 0.1 397.2 6.9 287.6

EteRNA structures

Name Restrictions Size Time Structure Sequence Image
Prion Pseudoknot View 36 16.29
Human astrovirus View 43 419.69
Homo Sapiens 1 Series View 83 4.19
HIV Primer Binding Site View 107 482.67
Homo Sapiens 3 View 109 126.22
Other Ribosomal RNA View 112 11.35
Bacilus Subtilis sRNA View 113 577.50
5s Ribosomal RNA View 120 126.44
Tribolium Castaneum View 123 50.17
Oryza sativa 4 View 176 187.03
Symbiotic plasmid View 300 479.35
Telomerase RNA View 546 441.70