RNALOSS (RNA locally optimal secondary structures)

Output on graph of density of states, as well as number of k-locally optimal structures, sample energy in kcal/mol.

Click here for box plot of density of states

Number of nucleotides: 72
Maximum level of suboptimality: 19
Number of bp for NJ optimal structure:28


Number of locally optimal str for this RNA
k 	Num k-locally optimal sec str

0	182	
1	14217	
2	729307	
3	2.50066E+07	
4	5.65844E+08	
5	8.73483E+09	
6	9.44336E+10	
7	7.30006E+11	
8	4.07133E+12	
9	1.62835E+13	
10	4.57574E+13	
11	8.73436E+13	
12	1.08413E+14	
13	8.29919E+13	
14	3.67656E+13	
15	8.69132E+12	
16	9.71724E+11	
17	4.24936E+10	
18	5.1725E+08	
19	878128	

Density values
k 	density

0	0.000000
1	0.000000
2	0.000000
3	0.000000
4	0.000001
5	0.000022
6	0.000241
7	0.001861
8	0.010382
9	0.041522
10	0.116679
11	0.222721
12	0.276446
13	0.211625
14	0.093750
15	0.022162
16	0.002478
17	0.000108
18	0.000001
19	0.000000
Sum of density values: 1.000000


Sample mfe for different levels of local optimality 
k 	sample mfe

0	-19.60
1	-13.30
2	-8.60
3	-9.50
4	3.70
5	1.40
6	10.00
7	8.90
8	28.20
9	14.70
10	43.40
11	36.60
12	30.50
13	37.60
14	43.90
15	50.70
16	51.90
17	48.40
18	41.90
19	31.20