DATA and some python programs to produce distribution of network degree

  • DATA.tar: tarball of this directory for downloading

    Some DATA

  • index.html: list of links in this subdirectory

    A few fasta files

  • Lcollosoma.faa
  • RA1180tRNA.faa
  • fruA.faa

    Tono's R code to produce correlation plot in R

  • correlationPlot.R

    ContactOrderDataForFigure11

  • corrPlot.R
  • NormalizedCorrelationMatPlot.eps
  • normalizedNborPlusContact.csv
  • notNormalizedCorrelationMatPlot.eps
  • notNormNborPlusContact.csv

    OutputRfamDataForFigure11

  • outFirstSeqEachFam200.txt
  • outMFEcontactOrderFirstSeqEachFam200.txt
  • outNativeContacts_FirstSeqEachFam200.txt
  • outNborDegreeEntropyContactOrderNativeContacts_RfamFirstSeqEachFamLen200.txt
  • RfamContactOrderNativeCont.eps

    SamplingMethodForNetworkDegreeDistribution

  • index.html: list of links in this subdirectory
  • computeDistributionOfNearestNeighbors_py.txt
  • computeExpNumNearestNhborsFromFASTAfile_py.txt
  • fruA.faa
  • Lcollosoma.faa
  • misc_py.txt
  • outFruAValues.txt
  • outLcollValues.txt
  • outRA1180Values.txt
  • PLMVd.faa
  • RA1180tRNA.faa
  • rna.ps
  • tmp
  • toy.faa
  • vienna_py.txt