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Find sequences in the seed aligment whose predicted minimum free energy structure corresponds to the alignment consensus structure Include sequences whose minimum free energy structure IS NOT IDENTICAL to the alignment consensus structure
Energy model Turner '99 Turner '04 Dangling end treatment No dangling positions (-d 0) Minimum energy (-d 1) Both dangling positions (-d 2) With coaxial stacking (-d 3)
Find 1 5 10 50 Max compatible sequences using inverse folding
Either upload a file containing a single RNA structure, paste in an RNA structure, or fill in fields in the verbose form. File upload Paste input Verbose input
File upload of one RNA structure (required):
Type/paste one structure (required): Load sample tRNA Inv. cofold Partial target Target amino acid seq. SECIS insertion Amino acid overlap
Fill the following fields: Load sample tRNA Inv. cofold Partial target Target amino acid seq. SECIS insertion Amino acid overlap Fasta comment Target structure (required) Sequence