This directory contains files to access the findpath
routine of the Vienna package, so that it can be
compared with the RNApathfinder program.

In case executable doesn't work, to compile, type
gcc -Wall accessFindPath.c libRNA.a -o accessFindPath -lm
The python script accessFindPath.py can then be used, 

For example try

accessFindPath.py example.faa

accessFindPath.c accesses the Vienna package routine findpath.
Appropriate .h files are included.

libRNA.a is a library containing the Viennaa package routines.

The parseFaaForSeq.py is just for parsing faa formatted or
similarly formatted files.

command_lines.faa contains many of the sequences used in the paper,
along with the two secondary structures.

Andy Lorenz
lorenzwi@bc.edu