Supplementary Data
The following sequences were used in benchmarking tests for the paper,
"On Lattice Protein Structure Prediction Revisited", submitted by
Ivan Dotu, Manuel Cebrian, Pascal Van Hentenryck, Peter Clote to
IEEE Transactions on Computational Biology and Bioinformatics.
HP-sequences used in benchmarking tests
Harvard Instances
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HPHHPPHHHHPHHHPPHHPPHPHHHPHPHHPPHHPPPHPPPPPPPPHH
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HHHHPHHPHHHHHPPHPPHHPPHPPPPPPHPPHPPPHPPHHPPHHHPH
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PHPHHPHHHHHHPPHPHPPHPHHPHPHPPPHPPHHPPHHPPHPHPPHP
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PHPHHPPHPHHHPPHHPHHPPPHHHHHPPHPHHPHPHPPPPHPPHPHP
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PPHPPPHPHHHHPPHHHHPHHPHHHPPHPHPHPPHPPPPPPHHPHHPH
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HHHPPPHHPHPHHPHHPHHPHPPPPPPPHPHPPHPPPHPPHHHHHHPH
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PHPPPPHPHHHPHPHHHHPHHPHHPPPHPHPPPHHHPPHHPPHHPPPH
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PHHPHHHPHHHHPPHHHPPPPPPHPHHPPHHPHPPPHHPHPHPHHPPP
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PHPHPPPPHPHPHPPHPHHHHHHPPHHHPHPPHPHHPPHPHHHPPPPH
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PHHPPPPPPHHPPPHHHPHPPHPHHPPHPPHPPHHPPHHHHHHHPPHH
Instances S
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HHHHPHHHHHHPPHHPHHHHHHHHPHHPHHHHHHHHHHPPHHPPPPPHHPHHHHHHHHPHPPHHPPPHHHHHHHHPHHHHHHPPHHHHHHHPHPPHHHHHHHHHPPHHPPPHHHHHHHPHHPHHHHHHHPPHHHH
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HHPPHPHHHHHHHHHHPHPPPPHHHPPPHHHHHPPHHHHHPPHHHHPPHHHHPPHHHHHHPHHHHPPPHHPPPHHHHHHHHPHPPHHHPPPHHHHHPPHHHHHHHPPPHHPPHHHHHPPPHHHHHHHHHPHPPHHHHHHHPPPHHHPPHHP
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HHHPPPHHPHHPPPPPHHHHHHHHPHPPHHPHHPHHHHHPPPHHHHHHHHHPPHPHPPHPHPPHHHPHPPHPHPPPHHHHHHPHHHHPPPHHHPPPPHHPPPHHHPPHHHHPHHHHHPPHHHHHHPPPHHHHHHPPPHPPHHHHPHHHHHHHPPHHPPHHH
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HHPPHPHHHHHHHPPHPHPPHPHPPPPHHHPPPHHPHPHHPPHHHHHPPHHHHPPHHHHPPHHHHHHPHHHHPPPHHPPPHHHHHHHHPHPPHHHPPPHHHHHPPHHHHHHPHPPPHHPPHHHPHHPPPHPHHHHHHHPHPPHPPHHHHHHPHPPPHHHPPHHP
Instances R
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PPPHPHHPHHPPPHPHPPPPHPHHPPHPHHHHHPPHHPPHHHHHHPPHPPHHPPHPHPHHHHHPHHPHHHPPPHHHPHHPPHPHPPHPPPHPPHPPHPPHHHPHHHPHPPHPHHPHHHHPHPHHHPHHHPPPPPPHHHHHHPPPPPPPPHHHPPHPHPPPHPHPHPHHPPHHPPPPHHHHHHPPPHHPPPPPHPPPHHPP
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HPHHPPHPPPPPHHPHPHPHHPPHPPPPHHHHHHPPPHPPHHHPPHPPPPHHPPHHHPHPHHHPPHPHHPPHPHHPPPPHHPPHPPHHHHPPPPPHHHPPPPHPPPPPPHPPHHPHHHHPHHHHHHHHPPHHPPPHPHHHPHHHHHPHHPHHHPHPHHPPPPHPHHPHHHPHPPPPHPPPPPPHPHHHHHPHHPPPHPPH
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HPHHHPHHPHPHPPPHHHHHPHPHPHHHHPPPHHPPPPPPHHPPPPHPHHHPPPPHPPPHHPHHPPPHPPHPPPHHHHPHHPHPPPPHHPPPHHPPHPPPHPPHHHPHHHPHPPHPHHHHPPHHPPPPHHHPHHPPHPPHHHHPPHPHPPHPHPPPPPHPHPHHHHHHHPHPHHHHHHPHHPPPPHPPPPHPPPHHHPHH
Instances F90
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PPHHHPPPHHPPPPHHPHHHHHHPHPHPHHPHHHHHPHHHPHPHHHHPHHPPPPHHHPHPHPPHHHPHHPHPHPPHHHPPPPHHPPHPPP
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PHHPPHPHHPHHHPHHHPPHHHHHHPPHPHPPPPHHHPHPPHHHHPHHHHPHHHPHHPPPPPHHPPPPHPHPHPHPHHPPHHHPPPHHHP
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HPHPHHHPHHHHPHHHPPPHPPPHPPPPHHHPPHPPPPHHHPPPPPPPPHPHHPHHHHPHHHPHPHHPPHHHHHPHHPPHHPHHHHHHPH
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PHHHPPHPPHPHPPPPHPPPHPHPPHPHHPHPPPHHHPHHHPPHHHPPHPPPPHPHHHPPHHPPHHHPPHHHHHHPHHHHHHHPHHHHPH
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PPPHPHHHHHHHPPPHPPHHHHHPHHPPHHPPHHHHPHPHPHHPPHHPPPPHPPPHHHPHPHHHHHHHPHHPHPPHHPPPHHHPHPPHPP
Instances F160
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HHPPHHHHHPHHHPPPHHHPPHHHPHPPHHHHHPPPHHHPPPHPHHPPPPPHHPPHHPHHPHPHHPPPPPHHHPPPPHPHHHPPHPPPHHHPHHHHPPHHPHPHHHHPHHHHPPHHPHHPHHPHHHPHPPHPHHPHPHHPHHHPHHPPHPPPHPPPPPPPHHHPHHHHHPHHHHHPPHPP
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PHHPHPPPHPPHHPHHHPHPHHPHHHPHHHPPPHHPPHPHPHHPHHHHPPHHPHPHHHHHPHHPPPPHPHPHPPHHHHPHHHHPHHHHHPPHPHHHPPPHPHPPHHPPPHHPHPHPPPPPHPHHPHHHPHPPPPHHPHHHHHPPPHHHHHHHHPHHPPPPPHPPPHPPHPPPHHPHHHHH
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HHHPHPPHHPPPHPPPHPHPHPPHHHHPPHHHHHHPHPHHPPPPPHPPHHPHHHHHHHHHHHPPHPPHPPHHHHHHHHPPPPHPPHHHHHPPHHHPPHHPPHHHHHPPPHHHHHHPHHHPPPHHPPHPPPHPPHPPPHPPPPHHHPPHHPHPPHHHPHHPPHHPHHPHPHPHPHPHPHHP
Predictions for Harvard instances
Will's H-core threading
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harvard1.pdb
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harvard2.pdb
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harvard3.pdb
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harvard4.pdb
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harvard5.pdb
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harvard6.pdb
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harvard7.pdb
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harvard8.pdb
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harvard9.pdb
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harvard10.pdb
Tabu plus LNS
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harvard1.pdb
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harvard2.pdb
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harvard3.pdb
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harvard4.pdb
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harvard5.pdb
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harvard6.pdb
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harvard7.pdb
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harvard8.pdb
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harvard9.pdb
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harvard10.pdb