Supplementary Data

The following sequences were used in benchmarking tests for the paper, "On Lattice Protein Structure Prediction Revisited", submitted by Ivan Dotu, Manuel Cebrian, Pascal Van Hentenryck, Peter Clote to IEEE Transactions on Computational Biology and Bioinformatics.

HP-sequences used in benchmarking tests

Harvard Instances

  1. HPHHPPHHHHPHHHPPHHPPHPHHHPHPHHPPHHPPPHPPPPPPPPHH
  2. HHHHPHHPHHHHHPPHPPHHPPHPPPPPPHPPHPPPHPPHHPPHHHPH
  3. PHPHHPHHHHHHPPHPHPPHPHHPHPHPPPHPPHHPPHHPPHPHPPHP
  4. PHPHHPPHPHHHPPHHPHHPPPHHHHHPPHPHHPHPHPPPPHPPHPHP
  5. PPHPPPHPHHHHPPHHHHPHHPHHHPPHPHPHPPHPPPPPPHHPHHPH
  6. HHHPPPHHPHPHHPHHPHHPHPPPPPPPHPHPPHPPPHPPHHHHHHPH
  7. PHPPPPHPHHHPHPHHHHPHHPHHPPPHPHPPPHHHPPHHPPHHPPPH
  8. PHHPHHHPHHHHPPHHHPPPPPPHPHHPPHHPHPPPHHPHPHPHHPPP
  9. PHPHPPPPHPHPHPPHPHHHHHHPPHHHPHPPHPHHPPHPHHHPPPPH
  10. PHHPPPPPPHHPPPHHHPHPPHPHHPPHPPHPPHHPPHHHHHHHPPHH

Instances S

  1. HHHHPHHHHHHPPHHPHHHHHHHHPHHPHHHHHHHHHHPPHHPPPPPHHPHHHHHHHHPHPPHHPPPHHHHHHHHPHHHHHHPPHHHHHHHPHPPHHHHHHHHHPPHHPPPHHHHHHHPHHPHHHHHHHPPHHHH
  2. HHPPHPHHHHHHHHHHPHPPPPHHHPPPHHHHHPPHHHHHPPHHHHPPHHHHPPHHHHHHPHHHHPPPHHPPPHHHHHHHHPHPPHHHPPPHHHHHPPHHHHHHHPPPHHPPHHHHHPPPHHHHHHHHHPHPPHHHHHHHPPPHHHPPHHP
  3. HHHPPPHHPHHPPPPPHHHHHHHHPHPPHHPHHPHHHHHPPPHHHHHHHHHPPHPHPPHPHPPHHHPHPPHPHPPPHHHHHHPHHHHPPPHHHPPPPHHPPPHHHPPHHHHPHHHHHPPHHHHHHPPPHHHHHHPPPHPPHHHHPHHHHHHHPPHHPPHHH
  4. HHPPHPHHHHHHHPPHPHPPHPHPPPPHHHPPPHHPHPHHPPHHHHHPPHHHHPPHHHHPPHHHHHHPHHHHPPPHHPPPHHHHHHHHPHPPHHHPPPHHHHHPPHHHHHHPHPPPHHPPHHHPHHPPPHPHHHHHHHPHPPHPPHHHHHHPHPPPHHHPPHHP

Instances R

  1. PPPHPHHPHHPPPHPHPPPPHPHHPPHPHHHHHPPHHPPHHHHHHPPHPPHHPPHPHPHHHHHPHHPHHHPPPHHHPHHPPHPHPPHPPPHPPHPPHPPHHHPHHHPHPPHPHHPHHHHPHPHHHPHHHPPPPPPHHHHHHPPPPPPPPHHHPPHPHPPPHPHPHPHHPPHHPPPPHHHHHHPPPHHPPPPPHPPPHHPP
  2. HPHHPPHPPPPPHHPHPHPHHPPHPPPPHHHHHHPPPHPPHHHPPHPPPPHHPPHHHPHPHHHPPHPHHPPHPHHPPPPHHPPHPPHHHHPPPPPHHHPPPPHPPPPPPHPPHHPHHHHPHHHHHHHHPPHHPPPHPHHHPHHHHHPHHPHHHPHPHHPPPPHPHHPHHHPHPPPPHPPPPPPHPHHHHHPHHPPPHPPH
  3. HPHHHPHHPHPHPPPHHHHHPHPHPHHHHPPPHHPPPPPPHHPPPPHPHHHPPPPHPPPHHPHHPPPHPPHPPPHHHHPHHPHPPPPHHPPPHHPPHPPPHPPHHHPHHHPHPPHPHHHHPPHHPPPPHHHPHHPPHPPHHHHPPHPHPPHPHPPPPPHPHPHHHHHHHPHPHHHHHHPHHPPPPHPPPPHPPPHHHPHH

Instances F90

  1. PPHHHPPPHHPPPPHHPHHHHHHPHPHPHHPHHHHHPHHHPHPHHHHPHHPPPPHHHPHPHPPHHHPHHPHPHPPHHHPPPPHHPPHPPP
  2. PHHPPHPHHPHHHPHHHPPHHHHHHPPHPHPPPPHHHPHPPHHHHPHHHHPHHHPHHPPPPPHHPPPPHPHPHPHPHHPPHHHPPPHHHP
  3. HPHPHHHPHHHHPHHHPPPHPPPHPPPPHHHPPHPPPPHHHPPPPPPPPHPHHPHHHHPHHHPHPHHPPHHHHHPHHPPHHPHHHHHHPH
  4. PHHHPPHPPHPHPPPPHPPPHPHPPHPHHPHPPPHHHPHHHPPHHHPPHPPPPHPHHHPPHHPPHHHPPHHHHHHPHHHHHHHPHHHHPH
  5. PPPHPHHHHHHHPPPHPPHHHHHPHHPPHHPPHHHHPHPHPHHPPHHPPPPHPPPHHHPHPHHHHHHHPHHPHPPHHPPPHHHPHPPHPP

Instances F160

  1. HHPPHHHHHPHHHPPPHHHPPHHHPHPPHHHHHPPPHHHPPPHPHHPPPPPHHPPHHPHHPHPHHPPPPPHHHPPPPHPHHHPPHPPPHHHPHHHHPPHHPHPHHHHPHHHHPPHHPHHPHHPHHHPHPPHPHHPHPHHPHHHPHHPPHPPPHPPPPPPPHHHPHHHHHPHHHHHPPHPP
  2. PHHPHPPPHPPHHPHHHPHPHHPHHHPHHHPPPHHPPHPHPHHPHHHHPPHHPHPHHHHHPHHPPPPHPHPHPPHHHHPHHHHPHHHHHPPHPHHHPPPHPHPPHHPPPHHPHPHPPPPPHPHHPHHHPHPPPPHHPHHHHHPPPHHHHHHHHPHHPPPPPHPPPHPPHPPPHHPHHHHH
  3. HHHPHPPHHPPPHPPPHPHPHPPHHHHPPHHHHHHPHPHHPPPPPHPPHHPHHHHHHHHHHHPPHPPHPPHHHHHHHHPPPPHPPHHHHHPPHHHPPHHPPHHHHHPPPHHHHHHPHHHPPPHHPPHPPPHPPHPPPHPPPPHHHPPHHPHPPHHHPHHPPHHPHHPHPHPHPHPHPHHP

Predictions for Harvard instances

Will's H-core threading

  1. harvard1.pdb
  2. harvard2.pdb
  3. harvard3.pdb
  4. harvard4.pdb
  5. harvard5.pdb
  6. harvard6.pdb
  7. harvard7.pdb
  8. harvard8.pdb
  9. harvard9.pdb
  10. harvard10.pdb

Tabu plus LNS

  1. harvard1.pdb
  2. harvard2.pdb
  3. harvard3.pdb
  4. harvard4.pdb
  5. harvard5.pdb
  6. harvard6.pdb
  7. harvard7.pdb
  8. harvard8.pdb
  9. harvard9.pdb
  10. harvard10.pdb