From The MarthLab
[edit] Welcome
This is the site for the beta release of our suite of analysis tools for next-generation sequencing machines. If you are a beta tester, you should have received the appropriate credentials to download the software, example data sets and relevant documentation. We respectfully request that you do not distribute any of the software, data or documentation to other parties.
[edit] Access
You will be able to access our beta software and serve as a beta tester by clicking on the following link: obtain download instructions and credentials. This form will request that you fill out your contact information. After this an automatically generated email will be sent to your email address with download instructions and credential information.
[edit] Software components
The following software is included in the "downloadable" packages below.
- PyroBayes: Base caller for 454 pyrosequencing reads
- MOSAIK: Reference Guided Read Aligner / Assembler
- GigaBayes: Short-read polymorphism detection software
EagleView, our sequence assembly viewing application must be installed separately as an RPM (RedHat Package Manager) package and should be downloaded here:
[edit] Download
Please download the distribution appropriate for your hardware. For simplicity, we have packaged the programs, the example data set, documentation, and pipeline scripts to process the data into a single archive.
Unified Release
This release includes PYROBAYES, MOSAIK, and GIGABAYES.
MOSAIK
- Additional platforms can be found on the Mosaik page.
EagleView
- EagleView can be downloaded here.
[edit] Found a bug?
Found a bug in the beta release? Please report it on our bug tracking website for quicker bug resolution.
[edit] Contact Information
Please contact the respective authors of each program with program-specific questions. The contact information for each author is available in the Beta Release documentation as well as on each of their respective web pages.
