Zip file for Needleman-Wunsch and Smith-Waterman sequence alignment

Program for Needleman-Wunsch sequence alignment

• Cdc25: FASTA sequence
• Ste6: FASTA sequence
• getPAMmatrix.py
• needlemanWunschUsingPAM.py: Needleman-Wunsch algorithm for pairwise global sequence alignment
• smithWatermanBoltzmann_teachingTool_py.: Smith-Waterman algorithm for pairwise local sequence alignment
• nuclLevenshteinDist.txt
• nuclPAM.txt: similarity matrix used for nucleotides with +1 for match (same nucleotide) and -1 for mismatch (different nucleotide)
• outDistributionSimScoresSnakeVenom.txt
• outPvalDist.txt
• pam250.txt: PAM250 amino acid similarity matrix (default)
• parameters.py
• run